species:   Fuoxy
pid:       PID2279
parent:    Fol-milR1
paralog:   
locus:     CM000601.1:1478120-1478228
matures:   ['UGGAUGAAUCAAGCGUGGUAUGAU', 'CGUAUCAUGCGUGAUUCAUCCAUC']
srr:       SRR14311542
genome:    /Users/jax/+Genomes/Fungal_genomes/Fuoxy.GCA_000149955.1_ASM14995v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Ji2021-nq.SRR14311542.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Ji2021-nq.SRR14311542.cram CM000601.1:1478120-1478228

2 out of bounds
3814 alignments
3814 proper strand
3214 stranded perfect matches

          *************************                                       *************************          
UACCUUUAUAUCGUAUCAUGCGUGAUUCAUCCAUCGCAAGGCGACAUAACCACCCUUUGUUCCUGGCGCAUAGCGAUGGAUGAAUCAAGCGUGGUAUGAUGUAAAGGUU
.((((((((((((((((((((.(((((((((((((((...(((.((.(((........)))..)).)))...))))))))))))))).)))))))))))))))))))).
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAU--------- l=24 a=48 c
-----------CGUAUCAUGCGUGAUUCAUCCAUC-------------------------------------------------------------------------- l=24 a=0 c*
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=2313 ma
------------GUAUCAUGCGUGAUUCAUCCAUC-------------------------------------------------------------------------- l=23 a=0 ma*

--------------------------------------------------------------------------------UGAAUCAAGCGUGGUAUGAa--------- l=20 a=2 
--------------------------------------------------------------------------------UGAAUCAAGCGUGGUAUGAU--------- l=20 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGG--------------- l=18 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGU-------------- l=19 a=25 
----------------------------------------------------------------------------UGGAUGAgUCAAGCGUGGU-------------- l=19 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGc-------------- l=19 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGa-------------- l=19 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGgGGU-------------- l=19 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUA------------- l=20 a=117 
----------------------------------------------------------------------------UGGAcGAAUCAAGCGUGGUA------------- l=20 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGaGUGGUA------------- l=20 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGaUA------------- l=20 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAU------------ l=21 a=125 
----------------------------------------------------------------------------UGaAUGAAUCAAGCGUGGUAU------------ l=21 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAa------------ l=21 a=12 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAc------------ l=21 a=11 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAg------------ l=21 a=2 
----------------------------------------------------------------------------UGGAcGAAUCAAGCGUGGUAU------------ l=21 a=1 
----------------------------------------------------------------------------UGGAUGAgUCAAGCGUGGUAU------------ l=21 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGcGGUAU------------ l=21 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUgU------------ l=21 a=2 
----------------------------------------------------------------------------UGGAUGAAUuAAGCGUGGUAU------------ l=21 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUG----------- l=22 a=582 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUa----------- l=22 a=93 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGcGGUAUG----------- l=22 a=3 
----------------------------------------------------------------------------UGGAUGAAcCAAGCGUGGUAUG----------- l=22 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGaUAUG----------- l=22 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAcG----------- l=22 a=2 
----------------------------------------------------------------------------UGGAUGAgUCAAGCGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------aGGAUGAAUCAAGCGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------cGGAUGAAUCAAGCGUGGUAUG----------- l=22 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAgG----------- l=22 a=2 
----------------------------------------------------------------------------UGGgUGAAUCAAGCGUGGUAUG----------- l=22 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAcCGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGaAUGAAUCAAGCGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGAcGAAUCAAGCGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAaCGUGGUAUG----------- l=22 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAAGaGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCgAGCGUGGUAUG----------- l=22 a=5 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUc----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGgAUCAAGCGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUu----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUaA---------- l=23 a=57 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=2313 (ma)
----------------------------------------------------------------------------UGGAUGAAcCAAGCGUGGUAUGA---------- l=23 a=5 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGcGGUAUGA---------- l=23 a=14 
----------------------------------------------------------------------------UGGAUGgAUCAAGCGUGGUAUGA---------- l=23 a=6 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGg---------- l=23 a=41 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGc---------- l=23 a=18 
----------------------------------------------------------------------------UGGAUGAAUCAgGCGUGGUAUGA---------- l=23 a=6 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGu---------- l=23 a=34 
----------------------------------------------------------------------------UGGAUGAAUCgAGCGUGGUAUGA---------- l=23 a=10 
----------------------------------------------------------------------------UGGcUGAAUCAAGCGUGGUAUGA---------- l=23 a=3 
----------------------------------------------------------------------------aGGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=3 
----------------------------------------------------------------------------UGGAUGAAUCcAGCGUGGUAUGA---------- l=23 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAAaCGUGGUAUGA---------- l=23 a=7 
----------------------------------------------------------------------------UGGgUGAAUCAAGCGUGGUAUGA---------- l=23 a=7 
----------------------------------------------------------------------------cGGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=7 
----------------------------------------------------------------------------UGGAUaAAUCAAGCGUGGUAUGA---------- l=23 a=3 
----------------------------------------------------------------------------gGGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUaGUAUGA---------- l=23 a=3 
----------------------------------------------------------------------------UGGAUGAgUCAAGCGUGGUAUGA---------- l=23 a=7 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGaAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAcGA---------- l=23 a=5 
----------------------------------------------------------------------------UGGAaGAAUCAAGCGUGGUAUGA---------- l=23 a=2 
----------------------------------------------------------------------------UGGAcGAAUCAAGCGUGGUAUGA---------- l=23 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGaGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGcAUCAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAcGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCaUGGUAUGA---------- l=23 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGcAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUgUGA---------- l=23 a=4 
----------------------------------------------------------------------------UaGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAcUCAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUuUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAgGAAUCAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGaAUGAAUCAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGaUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAuCGUGGUAUGA---------- l=23 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAa--------- l=24 a=125 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAc--------- l=24 a=16 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAg--------- l=24 a=6 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAU--------- l=24 a=48 (c)
----------------------------------------------------------------------------UGGAUGAAUCAAGCGaGGUAUGAU--------- l=24 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUgUGAU--------- l=24 a=1 
----------------------------------------------------------------------------UGGAUGAgUCAAGCGUGGUAUGAU--------- l=24 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUaAU--------- l=24 a=1 
----------------------------------------------------------------------------cGGAUGAAUCAAGCGUGGUAUGAU--------- l=24 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAUa-------- l=25 a=5 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAUG-------- l=25 a=2 
---------------------------------------------------------------------------cUGGAUGAAUCAAGCGUGGUAUGA---------- l=24 a=10 

mb-01011
ax-1011111
ku-11
ss-111111111110
fn-111
